Fast without losing accuracy
Separate the CPU and GPU parts, with AlphaFold's MSA construction and use of templates running in parallel on CPU, and training and inference on GPU.
AlphaFoldDB and other datasets
Mining AlphaFoldDB structures for new biological insight. How to improve the accuracy of those without a confident prediction in AlphaFoldDB.
AlphaFold wiki: Lessons learned over time.
How to avoid HHblits failure? How to improve I/O performance? How to run with long amino acid sequences? How to run faster, more ffficiently and accurately?